I agree with kimcrwrb1. The "test tank" method is the most thorough and reliable way to check the operation of the cooling system. As far as flushing goes, many of the small Honda thermostat housings have a port for a hose adapter that is for flushing out that portion of the cylinder head. I have found though, that if you use it, it will typically not reseal and you will have induced a leak at that port. I take the housing off and clean that area "manually".
That "chamber" is where most of the "crystallizing" takes place anyway since that is the where the heat is primarily being "exchanged" with the head. At least that is the nearest access to where there is the most heat.
Also, many outboards have "hidden" intake ports that do not get covered by either of the the MUFF designs. You need to locate and tape-seal those ports or risk the possibility of starving the pump for water and burning up your impeller and/or overheating your engine. In a "production shop" environment the MUFFS become an essential tool for the mechanic but I stopped using them years ago because of the drawbacks associated with them. Each person will make their own assessment here and do what seems best for them.
And, yes, the tell tale is not a good indicator for temperature. It is a "bypass" passage that is only used to indicate how much flow you have from the pump. It WILL get hot though if the engine is overheating. Try briefly running the engine and then shut it off while holding your finger under the tell tale stream. You will experience quite a bit of heat as the water flow ceases. This little "test" should illustrate to you how relatively "cool" that stream is in comparison to what is actually taking place in the engine.
CAREFUL though! Don't get burned!
Cheers,
jimmyd