Mikey
I had exact problem, replacing timber huge nightmare, so i driiled out affected area and poured in 2 part epoxy filler, next day drilled 3/8 holes for 1/2 inch x 4 in SS coach screws. Rock Solid.
you may need to use 90 deg angle drill if engine still in. (dont forget to support engine below sump)
Use 1 1/2 or 2in hole saw to break thru glass, and go deep down into stringer, as deep as possible. (x4). dig all soft wood out, and make sure hole is an odd shape so epoxy cant spin or pullout. (drill some angled holes into soft wood.)
pour in wood rot treatment as per Kainon said. I waited a week after treatment before filling with epoxy.
after treatment done, pour 2 part epoxy filler and fill to top. I used a product called "MEGAPOXY". cant find cat#, it was 50/50 mix of black and white gooey liquids, mixed product was grey (like a melted penguin).
Megapoxy has a few different products, make sure you use the one that is liquid enough to be poured into your 4 big holes.
Dried epoxy is hard, about same hardness as hardwood. can be drilled, screwed but does not shatter or chip like Fibreglass resin. Mark.