Ok, need to back up a step here.
You say it loses voltage - where?
You have a volt meter and it drops somewhat below 12 volts?
Or, you are assuming it's losing voltage because you develop a hesitation in the ignition.
The bobbins that provide power for the battery (which would be measured by a volt meter) and the bobbins that provide power for the ignition are completely different (units) such that one doesn't affect the other - although "both" could be toasted.
The other possible cause for both issues would be damage to the wire harness that comes from under the flywheel. If it's grounding/shorting out it could affect both your 12 volt system and the ignition...