Airtex and carter both make marine pumps...a really good parts person should be able to order one if not in stock.
As far as differences go, the marine pump has an 'extra' diaphragm in case the main one 'leaks'. Like Chris noted, any leaking fuel gets routed out of a nipple for relatively safe discharge into the carb. (Most auto pumps would discharge any leaking fuel into the crankcase, then the bilge if their diaphragms failed.)
Finally, I'd suggest eliminating the concept of using an auto pump on a marine application...just doesn't make any sense.