Pretty weird!
Do I understand that the motor did run for you before you connected gauges etc?
The black/yellow operates the main relay. Since you said you had 12v on the black/yellow to the main relay. Check the yellow/red lead going to the injectors. Connect you test light to ground and remove the connector from one of the injectors and check the voltage on the yellow/red ..... If there is not 12 v, the main relay is either not operating, a fuse is blown (although you said you checked them), or there is a bad connection.
As for the green light coming on before you turn the key switch to on....no theory on that one yet. The green light is operated by a signal from the ECM. If the ECM is not on, then it could be a faulty warning system, wiring issue or ECM.
The fuel pump relay (inside the main relay module) operates for two seconds from a ground from the ECM when the ECM is powered up. The yellow/red lead also goes to the ECM to power it up. I suggest the injector connector, since it is the same lead and easy to get to.
Mike