This type of switch can be referred to as an MBSS.... (main battery selector switch).
You can do as you wish...... as there are several ways to skin this cat!
However, this seems to work well for many:
Typically, #1 will be your Reserve "Cranking Battery".
This should be a dedicated cranking/starting type battery....
not Deep Cycle.
We can start on #1, warm engine, charge while doing so..... and then switch to Bank #2.
Bank #2 is commonly referred to as the "House Bank".
This bank can be multiples of Deep Cycle batteries.... best if
NOT cranking type batteries.
6 volt Golf Cart batteries (pairs cabled in series) work well here.
Amp Hours is what we're after here!
Most will run on Bank #2 when on the hook, docked, etc., keeping #1 in Reserve.
Engine alternator charging occurs to which ever battery the MBSS is set to..... #1 or #2.
Some will charge with the MBSS set to ALL/BOTH....... although I don't care to charge unlike battery banks this way.
Additionally, setting to ALL/BOTH leaves us open to forgetting that we have combined banks. Not a good scenario, when ultimately we want to keep #1 in reserve!
Your call on that!
A Blueseas ACR (automatic charge relay) can be added also.
Your 2 Bank O/B charger leads can connect directly to the rear of this MBSS, terminals #1 and #2, making this a direct and permanent connection.
Schematically, this is the same as a direct battery connection, but avoids small terminal corrosion, and the "Rat's Nest" at our batteries!
If you have a bilge pump float switch, this connection can be made directly to the larger bank terminal, #2, keeping this as
"un-interruptible" power.
MBSS
"Off", and this float switch circuit remains powered.
Here's an example:
If you want a more sophisticated system, Blueseas offers some great battery management switching products.