To check that both cylinders are firing and responding...............
With the engines running individually at what you would call normally, do a drop test, that is... with insulated pliers, pull one spark plug lead off one spark plug, then the other. You should obtain a identical response... Do you?
If all of the engines prove to be running normally... and unfortunately a 5hp or 6hp engine isn't going to break any speed records... you could try installing two engines via an adjoining steering link (Yes, it's been done), keeping the 3rd one for a spare... or upgrade to the next higher hp model.