Is the condensate drain plumbed overboard?... or does it dump to the bilge.
Also... In order for an A/C to lower the humidity, it has to run long enough. If the A/C comes on and then shuts off quickly (short cycles) because the temp has dropped enough, then you will not remove moisture from the air. This can be caused by two things... the A/C unit is too big (too high a BTU rating)... or the temp sensor is too close to the outlet of the A/C, i.e., the temp sensor get cooled off before the cabin does. Since the temp sensor usually located on the inlet of the A/C, it could mean that the outlet of the A/C is aimed too close to the inlet.
And, lastly, the temp setting of the A/C needs to be set below the local dew point temp.
Also... you said "humidifier system" did you really mean this or did you mean "dehumidifier". "humidifier" systems usually only operate on the heating cycle of a hot air heating system, i.e., an A/C system on reverse cycle.