I also had the misfire on cylinder #2 and could move it by moving the coil pack wires. After spending a bunch of bucks to replace coils, stator, trigger,and plugs, I took my boat home and it sat for 9 month. Yesterday I decided to try and fix it myself. After studying the stator, trigger, and coil pack wire diagrams I switched the two blue wires from position #3 with the other blue wire ( I think it was position #5) the misfire went away and it runs great. From what I understand the three cylinder only uses one side of the coil pack. So my shot in the dark was switch the two blue wires hoping it would phase the coil pack in the correct triggering configuration. IT WORKED. I was going to sell the boat out of frustration because even the boat shops could not make the misfire go away. As you have found out, information on repairing a Force # 2 Cylinder misfires is scares.
Hope this helps others. HAPPY FISHING- - -WATCH OUT WALLEYES!!!