Thanks hondadude, but I checked that first and the E-clip was still intact, and the shift shaft gear seems to be in alignment still. This evening I removed the lower unit and used a pry bar to pull the shift shaft down about 5/8 inch, and I can see the spline coming out the bottom of #6 just like the other engine. I am able to push it up and pull it back, so I am a bit worried that it will migrate up again and I will have the same issue at an inopportune moment (since last time the engine shifted into forward from neutral on it's own). I have decided to drill a very small hole (5/64") thru the center of the shift shaft just below #6 and insert a cotter pin so the shift shaft will not be able to slide up. I happened to have an extra long drill bit and managed to get about half way thru the shift shaft so far while it is in place. The drill bit is now dull (I think it started that way since I used plenty of oil during the process), so I am going to try and find another long bit tomorrow. May have to order one online to complete this job. I figure if the shaft breaks from having this tiny hole in it, I will need to replace the whole assembly anyway, so why not try this easy fix first.
Once I have it back together I will let you know if this worked. I think I drove the shaft beyond it's normal depth into #6 by misaligning the lower unit once, since I remember hearing a pop once when I was tightening the lower unit bolts.