Correct! Best if you do not try to use a single Deep Cycle for a cranking bank. These are not designed for this type of load...... not unless you have multiples in same bank.
Ditto the unlike batteries in the same bank, and will go so far as to suggest that for best results, these should be "like" in age, type, group #, previous number of cycles (if this were to apply) and even brand for the purists... of which I am! This can and will affect the over-all condition and health of a battery bank.
Trying to separate your house side from a Stbd engine, for example, can complicate your system.
Isolators are old school technology by today's standards, and they offer a voltage drop.
Consider an ACR by Bluesea, and you'll have a much better system, IMO.
Why not use an MBSS (main battery selector switch) of your choice, and make your two Stbd banks selectable?
Stbd may have a cranking battery on # 1, and your Deep Cycle House Bank may be on # 2, for example.
Switch accordingly!
Bluesea also offers some very good Combining and ACR systems for what you initially wanted to achieve.
Port engine need only have a good single cranking battery... most commonly on # 1.... # 2 is not used.
(the # 2 on port MBSS can be used for combining a source from Stbd bank)
Myself, I have a large bank of 6 volt D/C for my Stbd engine, and I do crank this engine on them.
No issues to date with either house loads, and/or cranking on this large bank.
My port engine has an over-sized cranking battery that the generator shares with it.
I also have a "combining" solenoid switch, that with the flick of a momentary helm switch, joins Port bank with Stbd bank!
It does this right at the "Common" terminals of my side-by-side MBSS's.
It's very clean and simple!
The PO had installed this, and I like having it there for an emergency low Stbd bank scenario.
Flick switch... I have instant Port side power to Stbd.
Knock on wood, haven't had to use it.